The last release reverted cross realm support, which means the name-realm pair in your team list will no longer work. You will need to add only the character name back in. As for removing the name-realm pair from your team list, you can edit the following config file.
WoW\WTF\<account>\SavedVariables\Jamba.lua
Find the team list section that looks like (there may be more than one);
["teamList"] = {
["Caaile-Realm"] = 3,
["Caaila-Realm"] = 2,
["Caaily-Realm"] = 6,
["Bootia-Realm"] = 1,
["Caailo-Realm"] = 5,
["Caaili-Realm"] = 4,
},
Remove the -Realm parts from the teamlist and you should be good to go.
Make sure you edit the file when WoW is not running. You will probably need to do it for each account as well.
Edit: You will need to disable ISBoxer management of the Jamba team (sorry Lax) or else it will try and add name-realm characters to the team list.
Edit 2: Try resetting the profiles. That should remove the old name-realm pairs.
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