I have this same issue from time to time when swapping in and out team members. At times it takes a while to get the master and macros setup. This usually happens when i push settings multiple times and they weren't processed for whatever reason. Nothing occurs until they are unblocked or unqueueed for the respective characters. The easiest solution is to log the characters in and out (character select screen) or jump into combat (which errors out the transfers since the macros won't push).
I usually jump into VH quick when I change Jamba settings significantly for this reason and the constant spawn of normals mobs and one shotting them with the characters, is easy enough to make this queuing issue become a non-issue.
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