Quote Originally Posted by Freddie View Post
Active Window Tracking doesn't distinguish one program from another but you might be able to get the effect you want some other way.

For example, you could set all your WoW windows "topmost" (always on top). That way your browser wouldn't cover up a WoW. That's not quite what you want , though.
I'm not entirely sure how it's handled, but Keyclone has a "Focus Follows Mouse" option that makes the mouseover'd WoW the focused window without clicking, and it doesn't use the global Windows setting, AKA it doesn't set the focus to non-WoW windows when they are moused over.

I'm not sure if you'd be able to use the same system as Keyclone to handle the active window tracking in Mojo or not (or even figure out how they handled it), but figured I'd mention it anyways.