It was super easy
Boot up Wow1, open Wowmapper, use console port as an addon.
Now the controller controls the toon on wow1.
open up wow2. If that is the focused window, the controller continues to control wow1 and you can mouse and keyboard wow2.
Its funny watching the warrior fight while the window is focused on the healer.
You could load the healer first and just use a macro on one of the controller buttons to heal the warrior. I may try that out once the game is back up
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