My solution that works every time is:
Define a key that renames your windows back to their original name.
Press the key to rename your windows twice. Then press the key to rename back to their original name once.
Here is the code I use for 2 WoWs:
Code:
<Hotkey ScrollLockOn Ctrl R>
<SendPC local>
<RenameWin "World of Warcraft" WoW1>
<RenameWin "World of Warcraft" WoW2>
<Hotkey ScrollLockOn Ctrl T>
<SendPC local>
<RenameWin WoW1 "World of Warcraft">
<RenameWin WoW2 "World of Warcraft">
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