For starters, this isn't really the ISBoxer support location. Either http://isboxer.com/forum or the support IRC channel http://isboxer.com/chat/ are better places for ISBoxer specific questions.

That said; there was an issue with the formation targeting. It was a bit broken. ISBoxer 41.13.0307.2 (rel 7/Mar/15) has a fix to correct this, although you would probably need to re-run the Quick Setup Wizard to get it to generate the standard mapped keys (you could do this on a clear profile and copy the resulting mapped keys to your existing profile).