Input Director and WoW

[Multibocks]

Hey all, trying to figure out why this happens. It's not consistent so I'm not even sure how to troubleshoot it. Basically Input Director works very well, except every once in a while when I swap monitors (so going to the other computer in a 2 computer setup) it enables auto run on the computer screen that I left. So my main (or which ever character I had in the main scree) will run off while I'm on other monitor. Also I see that one of my control maps will turn on and off as I move back and forth between screens. They don't always happen together though. I can have the run problem without the keymaps toggling and vice versa. Any ideas?

edit: forgot to mention my workaround. If I put up any window over the WoW windows then when I swap to other computer my main won't run off.