Wasn't it mentioned in previous threads that your settings might get reset after a patch to one value even though they're showing a different value (i.e. video settings are actually a higher value compared to what you were running prior to a patch -- assuming you didn't adjust them already)?

Perhaps clearing out your virtual files, re-exporting from ISBoxer, and then adjusting them as necessary may fix the issue. Just a random though since I don't actually play SW:TOR. This is also assuming you (everyone who tries this) have SW:TOR virtual files set up correctly in the first place.