I would not count on having all of the same features we have for WoW (which we have because of Addons and in-game macros, as MiRai mentioned).

The Quick Setup Wizard for SWTOR will generate the same non-WoW base configuration as it does for other games, for the time being. I may add another wizard to ISBoxer soon that can set up general follow/assist from any window in games that have these functions, though.