I am assuming that they have not changed that mechanic in Stratholme. Periodically, a non-elite undead mob (looks like a black ghost) will spawn near the group and you'll see an emote or yell like "The Eye of Naxxramas says The living are here!"
If it is not killed within a few seconds, two elite gargoyles will spawn and attack the group. The ghosts do not spawn when the instance is generated, so it doesn't matter that you cleared every mob you saw.
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