make sure you are using v1.8e

v1.8e introduced BOOBS to PiP... so no matter what screen you are in, F3 will always bring you the same wow clone

EDIT- Do you know if there is a way to make Vista automatically
activate a window when you mouseover it? That way I don't have to click
on every window at least 2 times per 1 window click.
CHECK keyclone/setup/general/focus follows mouse