The If-statements in your <Hotkey NumPad1> are asking which WoW has the focus on the local PC.
But one of the WoWs is running on the remote PC. It never has the focus on the local PC. Therefore, one of the If-statements in your hotkey can never be true and it can never execute.
If you want HotkeyNet to do something conditionally based on conditions on the remote PC, you need to load a script on the remote PC. Put a hotkey in that script with the appropriate If-statement. Then trigger that hotkey from the local PC with a second hotkey definition that includes <DoHotkey ...>.
P.S. Each of your machines has its own active window (a window that has the focus). Input Director (like all KM programs) disguises this fact from you by making it appear that there is only one active window for both machines. But really there are two active windows at all times, one on each machine. You may need to take this into account.
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