When you keymap keyclone to send LCTRL + key it will send RCTRL + key. I'm in the process of changing all the macros to leave out LCTRL completely. I'll post em when I'm done for others to use if they want.
-Yep. this bug exists in keyclone since its beginning and Rob should be aware of it, as several times it was mentioned (but sadly never fixed). For me it was the dealbracker for using keyclone and my number one reason to switch to hkn.