sounds like you forgot to set the 'always on top' option.

if you'd like, to make life easier, you could give the alpha a shot. (link )

the new maximizer allows for some pre-defined layouts to be selected. notice the buttons down the right side:



the pip button will create a 2 region layout with one always-on-top. you will have to go through each region and set your pip keys as well as the region based keymap, if you wish. the in-game resolutions will be taken care of for you.

another thing you'll have to mod is the region names. when you select the pre-defined layouts, the names change to something like:
ie: region1.2

this means screen 1 region 2. on the command editor, you no longer type the region. instead, you select it from a list of the region names that exist in the current maximizer layout.




(and no, the battle.net settings don't work just yet)

let me know if that helps,

Rob