For running missions the Raven is pretty much the ship of choice for L4 missions. Once you build up money good mission runners move up to a Raven Navy issue and then possibly later on a Golem. If you really want to get fancy with missions then you can train up one of your alts to run a remote repping logistics ship to be your space priest. If your main pilot is a shield tanker (Raven, Drake, etc) then the Basilisk is the ship of choice. If your main is an armor Tanker (Dominix is an example) then you want the Oneiros (Gallente Logistics ship). If I was to make a recomendation for running missions I would do 2 Ravens, 1 Baslisk and one Loot/Salvager. This will shred all level 4 and 5 missions in the game.
FoF missiles are almost entirely worthless for anything in the game. Whatever you do please don't use them. Sure you don't have to pay attention to what you are shooting at but you are going to do absolute crap DPS and this method will take forever to complete missions. Drones are great but the problem with some missions is they will cause the entire room to aggro which could be very bad. You have to know the missions well to be an effective drone user. Don't take this as a diss on drones though because they are awesome. Additionally drones take a lot of micromanagement, because of this they are a very poor choice for a multiboxer.
For running missions there is a great website that has info on all the missions in the game that is usable with the in game browser:
http://eve-survival.org/wikka.php?wakka=MissionReports
TLDR: Use Ravens for PvE. :thumbup:
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