That unfortunately did not resolve the issue. It was not set, (None of the mouse options on the general tan were set) I still hit clear, then started the clients and it was flipping the screens again.
This is a list of all my current settings


Command Editor:
Command name: Account Name
cpu affinity: none
program: to my wow.exe
keymap: empty
region: region1
wow: username: checked with my username
wow: maxfpsbk: 15 maxfps: 15
always on top: unchecked
lock in foreground: unchecked
exclude from round robin: unchecked

do-not-pass: empty
general
Keyclone name: machine name
send only: unchecked
local port: 1320
performance boost: checked
auto-add windows titled: world of warcraft
checked exact match
auto-add keymap: blank
pass mouse click hotkey: blank
distinguish left/right mouse click: unchecked
focus follows mouse: unchecked
keyclone always on top: unchecked
startup command: checked with (firstaccount; second account)
auto-connect: checked with (primary comp ip)

keymap editor: empty
language: empty
maximizer: set up as screen shot above
misc: both unchecked
mouse-map: empty
override settings: default
proxy settings: empty
round robin: empty
sound events: default