If I were in your position, I would start again from the beginning.

Delete (or rename) the Keyclone folder completely, download it again from the link on this site, and then just run it with NO changes at all.

Run keyclone and don't change any of the options at all.
Run WoW1 manually.
Run WoW2 manually.

See if all the keys are passed. If they are, then it's one of the configuration steps that's messed it up, and I reckon that's what you'll find.