Settings getting reset?

Any one have any idea why the settings for all my toons keep getting reset? I afk logged out the other nite and when I logged back in later all my bars were reset and all of xperl was reset. Its happened a few times here recently. Is there one file I can copy and keep somewhere to copy back when this happens? Something in the WTF folder? Or is my only option to manually put it all back where it goes and reset all my bars? I try keeping the profiles in each app updated and saved but to no avail. I use Bartender4, X-perl, Jamba, Twobox-toolkit (which actually I only use for the emote followme function and as a side question does anyone know if I can use Jamba for that so I can stop using the mod just for that?), and Hotkeynet. Thanks all:)