WoW Windows Losing Resolution Settings (annoying)

Heyo, so I'm using Keyclone and the Maximizer. It works great, but about every 2nd or 3rd time I launch WoW one or more of my Maximizer windows will have the resolution reset to 800x600 instead of 1024x768. I don't mind this too much if it's one of my alt windows but it does it to the main window occasionally as well and, well, it's annoying to have to log in, change preferences, log out, relaunch Keyclone. Is there a fix to this problem? Right now I'm launching all the instances of WoW from the same folder; if Ichange to multiple folders would it fix this?